What we can say with some confidence is that there is no inherent difference between proteins created one way (grown inside a cow) and chemically identical proteins grown in the lab. The digestive system has no way of differentiating between them and there's no inherent good or bad health impact from one as opposed to the other.
Can we be sure about that? For some reason, people seem to be developing digestive problems, so things like IBS or food intolerances*. That could be due to changing diets, or how we digest highly processed foods. If synthetic protein's more in the form of Jamie Oliver's 'pink slime', then perhaps we can digest it more efficiently, but then might develop problems due to a paste diet. Could be good news for the wood pulp and toilet paper industry though.
It's one of those fun subjects the SF writers have thought about though, ie the poor get fed nutripaste, the wealthy eat steak.
*something that's intrigued me, ie are rates really increasing, or is it just we're more able to diagnose those issues?