MFi & CarPlay
I can't see Apple removing the lightning port anytime soon. A couple of good reasons off the top of my head are MFi & CarPlay.
Apple make a shit tonne of money through MFi certification for Lightning products. Why kill that golden goose for Qi which they'd make practically nothing off. I think they've only just started supporting Qi because customers really pushed for it's inclusion and it's omission was a negative on side by side comparison in device reviews with Android devices that do have it.
Most CarPlay device out there require a lightning connection. iOS has supported wireless CarPlay since version 9 but there's still only a handful of cars with it factory fitted (only Mercedes & BMW last time I checked) and number of after market units.