CC Cleaner is an enterprise tool?
IME, third party optimisation tools like CC Cleaner are STRONGLY disapproved of by enterprise IT teams, and ITSec staff. For home users, tinkerers, might have some use, but the only installation on corporate systems I could see being useful would be for compatibility testing (which shouldn't be internet facing, or loose on the corporate network?).
I therefore wonder if the 40 infected machines were on unapproved installations by users? Some might need admin privileges for development purposes, but I still wonder why CC Cleaner found its way onto these corporate systems.