How exactly does this execute?
Does it ship with a Javascript interpreter? Or is it compiled down to a .EXE? In either case, the fact it was written in Javascript is pretty irrelevant, it's the fact that the user clicked on a binary executable that matters.
Otherwise: it sounds like it requires a Javascript environment which (a) executes outside a browser, and (b) has the ability to read and write files directly on the host filesystem. Surely most PCs don't have this by default?